Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Dde_1893 | Dde_4009 | ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sat:SYN_02218 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, C-terminal; Haloacid dehalogenase-like hydrolase. | Hypothetical protein. | 0.586 |
Dde_1895 | Dde_4009 | KEGG: sfu:Sfum_1508 hypothetical protein. | Hypothetical protein. | 0.462 |
Dde_4009 | Dde_1893 | Hypothetical protein. | ATPase, P-type (transporting), HAD superfamily, subfamily IC; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sat:SYN_02218 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, C-terminal; Haloacid dehalogenase-like hydrolase. | 0.586 |
Dde_4009 | Dde_1895 | Hypothetical protein. | KEGG: sfu:Sfum_1508 hypothetical protein. | 0.462 |