STRINGSTRING
Dde_4011 Dde_4011 Dde_0152 Dde_0152 Dde_2388 Dde_2388 Dde_3501 Dde_3501 Dde_0151 Dde_0151 rsmI rsmI Dde_0767 Dde_0767 ubiX ubiX
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dde_4011PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: dvm:DvMF_2126 excinuclease ABC C subunit domain protein. (92 aa)    
Predicted Functional Partners:
Dde_0152
KEGG: dvm:DvMF_2125 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Belongs to the DEAD box helicase family.
       0.655
Dde_2388
KEGG: dvl:Dvul_1912 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.
 
    0.639
Dde_3501
PFAM: Methyltransferase small; KEGG: dma:DMR_28910 hypothetical protein.
  
  
 0.634
Dde_0151
Beta-lactamase domain protein; SMART: Beta-lactamase-like; KEGG: dvl:Dvul_0081 beta-lactamase domain-containing protein; Belongs to the UPF0173 family.
       0.627
rsmI
Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.585
Dde_0767
Hypothetical protein.
  
  
 0.569
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.526
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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