STRINGSTRING
Dde_4025 Dde_4025 Dde_1614 Dde_1614 Dde_1615 Dde_1615 Dde_1616 Dde_1616 Dde_1617 Dde_1617 Dde_1612 Dde_1612
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_4025KEGG: dvl:Dvul_0511 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Dde_1614
KEGG: dvl:Dvul_0512 regulatory protein GntR, HTH; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR.
       0.773
Dde_1615
KEGG: dvl:Dvul_0510 amino acid transporter, AAT family.
       0.773
Dde_1616
KEGG: dvl:Dvul_0509 metallo-beta-lactamase family protein.
       0.705
Dde_1617
PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; KEGG: dvu:DVU2805 P47K family cobalamin synthesis protein.
       0.641
Dde_1612
KEGG: dvu:DVU2801 hypothetical protein.
       0.401
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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