Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Dde_3171 | Dde_4047 | Dde_3171 | Dde_4047 | PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_2795 acetyltransferase. | Hypothetical protein. | 0.538 |
Dde_3171 | rsgA | Dde_3171 | Dde_3170 | PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_2795 acetyltransferase. | Ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.848 |
Dde_3173 | Dde_4047 | Dde_3173 | Dde_4047 | TIGRFAM: Translation elongation factor, selenocysteine-specific; Small GTP-binding protein; KEGG: dvm:DvMF_2506 selenocysteine-specific translation elongation factor; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor SelB, winged helix, type 3; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor EFTu/EF1A, domain 2. | Hypothetical protein. | 0.473 |
Dde_4047 | Dde_3171 | Dde_4047 | Dde_3171 | Hypothetical protein. | PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_2795 acetyltransferase. | 0.538 |
Dde_4047 | Dde_3173 | Dde_4047 | Dde_3173 | Hypothetical protein. | TIGRFAM: Translation elongation factor, selenocysteine-specific; Small GTP-binding protein; KEGG: dvm:DvMF_2506 selenocysteine-specific translation elongation factor; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor SelB, winged helix, type 3; Translation elongation factor SelB, winged helix, type 2; Translation elongation factor EFTu/EF1A, domain 2. | 0.473 |
Dde_4047 | rsgA | Dde_4047 | Dde_3170 | Hypothetical protein. | Ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.527 |
rsgA | Dde_3171 | Dde_3170 | Dde_3171 | Ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | PFAM: GCN5-related N-acetyltransferase; KEGG: sse:Ssed_2795 acetyltransferase. | 0.848 |
rsgA | Dde_4047 | Dde_3170 | Dde_4047 | Ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | Hypothetical protein. | 0.527 |