AGE24511.1 protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGE24511.1

COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)

Predicted Functional Partners:

AGE24512.1

0.959

AGE24506.1

0.908

AGE24509.1

0.833

AGE27205.1

0.827

AGE24510.1

0.825

AGE26015.1

0.825

AGE26179.1

0.825

AGE24828.1

0.822

AGE25564.1

0.822

AGE27764.1

0.813

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE24506.1	AGE24509.1	H045_02150	H045_02165	Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	0.708
AGE24506.1	AGE24510.1	H045_02150	H045_02170	Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	Hypothetical protein.	0.725
AGE24506.1	AGE24511.1	H045_02150	H045_02175	Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	0.908
AGE24506.1	AGE24512.1	H045_02150	H045_02180	Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	Putative transmembrane sensor protein; COG3712 Fe2+-dicitrate sensor, membrane component.	0.662
AGE24509.1	AGE24506.1	H045_02165	H045_02150	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	0.708
AGE24509.1	AGE24510.1	H045_02165	H045_02170	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	Hypothetical protein.	0.946
AGE24509.1	AGE24511.1	H045_02165	H045_02175	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	0.833
AGE24509.1	AGE24512.1	H045_02165	H045_02180	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	Putative transmembrane sensor protein; COG3712 Fe2+-dicitrate sensor, membrane component.	0.841
AGE24509.1	AGE25564.1	H045_02165	H045_07470	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	Heme uptake transmembrane sensor; COG3712 Fe2+-dicitrate sensor, membrane component.	0.442
AGE24509.1	AGE26015.1	H045_02165	H045_09740	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	Putative inner membrane sensor for iron transport; COG3712 Fe2+-dicitrate sensor, membrane component.	0.466
AGE24509.1	AGE27205.1	H045_02165	H045_15700	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	Putative regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	0.401
AGE24509.1	AGE27764.1	H045_02165	H045_18510	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	Sigma factor regulatory protein, FecR/PupR family; COG3712 Fe2+-dicitrate sensor, membrane component.	0.404
AGE24510.1	AGE24506.1	H045_02170	H045_02150	Hypothetical protein.	Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	0.725
AGE24510.1	AGE24509.1	H045_02170	H045_02165	Hypothetical protein.	Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.	0.946
AGE24510.1	AGE24511.1	H045_02170	H045_02175	Hypothetical protein.	COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	0.825
AGE24510.1	AGE24512.1	H045_02170	H045_02180	Hypothetical protein.	Putative transmembrane sensor protein; COG3712 Fe2+-dicitrate sensor, membrane component.	0.840
AGE24510.1	AGE25564.1	H045_02170	H045_07470	Hypothetical protein.	Heme uptake transmembrane sensor; COG3712 Fe2+-dicitrate sensor, membrane component.	0.482
AGE24510.1	AGE26015.1	H045_02170	H045_09740	Hypothetical protein.	Putative inner membrane sensor for iron transport; COG3712 Fe2+-dicitrate sensor, membrane component.	0.432
AGE24510.1	AGE27764.1	H045_02170	H045_18510	Hypothetical protein.	Sigma factor regulatory protein, FecR/PupR family; COG3712 Fe2+-dicitrate sensor, membrane component.	0.411
AGE24511.1	AGE24506.1	H045_02175	H045_02150	COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.	Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.	0.908