STRINGSTRING
AGE24856.1 AGE24856.1 AGE24855.1 AGE24855.1 AGE24854.1 AGE24854.1 AGE28707.1 AGE28707.1 AGE25236.1 AGE25236.1 AGE24853.1 AGE24853.1 AGE24852.1 AGE24852.1 AGE24411.1 AGE24411.1 AGE25039.1 AGE25039.1 AGE26951.1 AGE26951.1 AGE27966.1 AGE27966.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE24856.1Outer membrane porin, OprD family protein. (430 aa)    
Predicted Functional Partners:
AGE24855.1
Tricarboxylate transport protein TctC; COG3181 Uncharacterized protein conserved in bacteria.
  
    0.837
AGE24854.1
Putative transporter-like membrane protein.
 
    0.710
AGE28707.1
Putative deacetylase; COG2120 Uncharacterized proteins, LmbE homologs.
  
     0.706
AGE25236.1
Hypothetical protein.
  
     0.682
AGE24853.1
Putative transporter-like membrane protein; COG3333 Uncharacterized protein conserved in bacteria.
  
    0.670
AGE24852.1
Membrane protein AbrB; COG3180 Putative ammonia monooxygenase.
  
    0.669
AGE24411.1
Alginate biosynthesis protein AlgK; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.666
AGE25039.1
Hypothetical protein.
  
     0.627
AGE26951.1
Putative lipoprotein.
  
     0.627
AGE27966.1
COG3204 Uncharacterized protein conserved in bacteria.
  
     0.621
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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