STRINGSTRING
AGE25266.1 AGE25266.1 AGE25265.1 AGE25265.1 rpoA rpoA lysS lysS AGE25267.1 AGE25267.1 AGE25264.1 AGE25264.1 AGE25674.1 AGE25674.1 rpoB rpoB surA surA AGE26339.1 AGE26339.1 pgaA pgaA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
AGE25266.1COG0625 Glutathione S-transferase. (210 aa)    
Predicted Functional Partners:
AGE25265.1
COG0417 DNA polymerase elongation subunit (family B).
       0.738
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.562
lysS
COG1190 Lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.489
AGE25267.1
Hypothetical protein.
       0.465
AGE25264.1
TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.460
AGE25674.1
Metalloprotease; COG2931 RTX toxins and related Ca2+-binding proteins.
  
    0.455
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.451
surA
Putative chaperone; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
    
 
 0.423
AGE26339.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.419
pgaA
Outer membrane protein PgaA; COG0457 FOG: TPR repeat.
  
     0.419
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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