STRINGSTRING
AGE25433.1 AGE25433.1 AGE25429.1 AGE25429.1 AGE25432.1 AGE25432.1 clpV clpV AGE25431.1 AGE25431.1 AGE25428.1 AGE25428.1 AGE25430.1 AGE25430.1 AGE25434.1 AGE25434.1 AGE25427.1 AGE25427.1 AGE25439.1 AGE25439.1 AGE25438.1 AGE25438.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGE25433.1ClpA/B-type protease; COG0542 ATPases with chaperone activity, ATP-binding subunit. (812 aa)    
Predicted Functional Partners:
AGE25429.1
Type VI secretion protein TssC2; COG3517 Uncharacterized protein conserved in bacteria.
 
 
 0.928
AGE25432.1
Type VI secretion protein TssG2; COG3520 Uncharacterized protein conserved in bacteria.
 
  
 0.916
clpV
Type VI secretion ATPase ClpV1; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
  
  
 
0.908
AGE25431.1
Type VI secretion protein TssF2; COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.906
AGE25428.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.871
AGE25430.1
GPW/gp25 family protein; COG3518 Uncharacterized protein conserved in bacteria.
 
  
 0.858
AGE25434.1
Sigma-54 dependent transcriptional regulator, Fis family protein; COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains.
  
 
 0.833
AGE25427.1
COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.780
AGE25439.1
Putative outer membrane protein; COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.777
AGE25438.1
Type VI secretion protein TssK2; COG3522 Uncharacterized protein conserved in bacteria.
 
  
 0.769
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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