STRINGSTRING
dnaQ dnaQ AGE28270.1 AGE28270.1 dnaX dnaX dnaE dnaE holA holA rnhA rnhA AGE24519.1 AGE24519.1 AGE27762.1 AGE27762.1 holB holB AGE27525.1 AGE27525.1 dnaE2 dnaE2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaQDNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (248 aa)    
Predicted Functional Partners:
AGE28270.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 0.989
dnaX
DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
 0.988
dnaE
COG0587 DNA polymerase III, alpha subunit.
   
 0.977
holA
COG1466 DNA polymerase III, delta subunit.
  
 
 0.967
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
  
 0.957
AGE24519.1
COG2927 DNA polymerase III, chi subunit.
 
 
 0.944
AGE27762.1
Putative DNA poymerase; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
  
 0.925
holB
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
   
 0.924
AGE27525.1
Exonuclease family protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
  
 
0.919
dnaE2
Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
   
 
 0.782
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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