Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGE24750.1 | AGE25751.1 | H045_03370 | H045_08405 | COG1793 ATP-dependent DNA ligase. | COG3569 Topoisomerase IB. | 0.639 |
| AGE24750.1 | ku | H045_03370 | H045_07585 | COG1793 ATP-dependent DNA ligase. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.586 |
| AGE24837.1 | AGE25525.1 | H045_03805 | H045_07275 | Hypothetical protein; COG5478 Predicted small integral membrane protein. | Lipoprotein; COG3652 Predicted outer membrane protein. | 0.575 |
| AGE24837.1 | ku | H045_03805 | H045_07585 | Hypothetical protein; COG5478 Predicted small integral membrane protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.517 |
| AGE24837.1 | ligD | H045_03805 | H045_08195 | Hypothetical protein; COG5478 Predicted small integral membrane protein. | ATP-dependent DNA ligase; COG0708 Exonuclease III. | 0.690 |
| AGE25387.1 | ku | H045_06575 | H045_07585 | COG2323 Predicted membrane protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.482 |
| AGE25525.1 | AGE24837.1 | H045_07275 | H045_03805 | Lipoprotein; COG3652 Predicted outer membrane protein. | Hypothetical protein; COG5478 Predicted small integral membrane protein. | 0.575 |
| AGE25525.1 | AGE25751.1 | H045_07275 | H045_08405 | Lipoprotein; COG3652 Predicted outer membrane protein. | COG3569 Topoisomerase IB. | 0.535 |
| AGE25525.1 | AGE27626.1 | H045_07275 | H045_17820 | Lipoprotein; COG3652 Predicted outer membrane protein. | Hypothetical protein. | 0.589 |
| AGE25525.1 | ku | H045_07275 | H045_07585 | Lipoprotein; COG3652 Predicted outer membrane protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.451 |
| AGE25525.1 | ligD | H045_07275 | H045_08195 | Lipoprotein; COG3652 Predicted outer membrane protein. | ATP-dependent DNA ligase; COG0708 Exonuclease III. | 0.619 |
| AGE25588.1 | AGE25589.1 | H045_07590 | H045_07595 | Hypothetical protein. | Hypothetical protein; COG2133 Glucose/sorbosone dehydrogenases. | 0.772 |
| AGE25588.1 | ku | H045_07590 | H045_07585 | Hypothetical protein. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.505 |
| AGE25589.1 | AGE25588.1 | H045_07595 | H045_07590 | Hypothetical protein; COG2133 Glucose/sorbosone dehydrogenases. | Hypothetical protein. | 0.772 |
| AGE25589.1 | ku | H045_07595 | H045_07585 | Hypothetical protein; COG2133 Glucose/sorbosone dehydrogenases. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.495 |
| AGE25751.1 | AGE24750.1 | H045_08405 | H045_03370 | COG3569 Topoisomerase IB. | COG1793 ATP-dependent DNA ligase. | 0.639 |
| AGE25751.1 | AGE25525.1 | H045_08405 | H045_07275 | COG3569 Topoisomerase IB. | Lipoprotein; COG3652 Predicted outer membrane protein. | 0.535 |
| AGE25751.1 | AGE27626.1 | H045_08405 | H045_17820 | COG3569 Topoisomerase IB. | Hypothetical protein. | 0.516 |
| AGE25751.1 | ku | H045_08405 | H045_07585 | COG3569 Topoisomerase IB. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.700 |
| AGE25751.1 | ligD | H045_08405 | H045_08195 | COG3569 Topoisomerase IB. | ATP-dependent DNA ligase; COG0708 Exonuclease III. | 0.827 |
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