AGE25603.1 protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGE25603.1

Putative aerobic respiration sensor-response protein; COG0642 Signal transduction histidine kinase. (776 aa)

Predicted Functional Partners:

AGE25602.1

0.902

AGE25388.1

0.867

AGE25604.1

0.853

AGE27594.1

0.839

AGE24437.1

0.833

AGE26528.1

0.831

AGE25605.1

0.824

AGE25784.1

0.803

AGE25693.1

0.782

AGE25894.1

0.771

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE24437.1	AGE25388.1	H045_01805	H045_06580	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	0.580
AGE24437.1	AGE25603.1	H045_01805	H045_07665	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	Putative aerobic respiration sensor-response protein; COG0642 Signal transduction histidine kinase.	0.833
AGE24437.1	AGE25693.1	H045_01805	H045_08115	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	Putative two-component response regulator transcriptional regulatory protein; COG0784 FOG: CheY-like receiver.	0.853
AGE24437.1	AGE25784.1	H045_01805	H045_08570	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	Putative two-component system histidine kinase/response regulator fusion; COG0642 Signal transduction histidine kinase.	0.525
AGE24437.1	AGE25894.1	H045_01805	H045_09120	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	Two-component sensor/response regulator protein; COG0642 Signal transduction histidine kinase.	0.686
AGE24437.1	AGE26528.1	H045_01805	H045_12315	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	Sensor histidine kinase; COG2202 FOG: PAS/PAC domain.	0.673
AGE24437.1	AGE27594.1	H045_01805	H045_17660	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	Putative two-component system sensor kinase; COG2203 FOG: GAF domain.	0.762
AGE25388.1	AGE24437.1	H045_06580	H045_01805	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Putative response regulator receiver domain-containing protein; COG0784 FOG: CheY-like receiver.	0.580
AGE25388.1	AGE25602.1	H045_06580	H045_07660	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Putative two-component system response regulator; COG0784 FOG: CheY-like receiver.	0.703
AGE25388.1	AGE25603.1	H045_06580	H045_07665	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Putative aerobic respiration sensor-response protein; COG0642 Signal transduction histidine kinase.	0.867
AGE25388.1	AGE25604.1	H045_06580	H045_07670	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Putative two-component system response regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.424
AGE25388.1	AGE25693.1	H045_06580	H045_08115	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Putative two-component response regulator transcriptional regulatory protein; COG0784 FOG: CheY-like receiver.	0.960
AGE25388.1	AGE25784.1	H045_06580	H045_08570	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Putative two-component system histidine kinase/response regulator fusion; COG0642 Signal transduction histidine kinase.	0.991
AGE25388.1	AGE25894.1	H045_06580	H045_09120	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Two-component sensor/response regulator protein; COG0642 Signal transduction histidine kinase.	0.979
AGE25388.1	AGE26528.1	H045_06580	H045_12315	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Sensor histidine kinase; COG2202 FOG: PAS/PAC domain.	0.995
AGE25388.1	AGE27594.1	H045_06580	H045_17660	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	Putative two-component system sensor kinase; COG2203 FOG: GAF domain.	0.899
AGE25602.1	AGE25388.1	H045_07660	H045_06580	Putative two-component system response regulator; COG0784 FOG: CheY-like receiver.	Two-component system, chemotaxis family, CheB/CheR fusion protein; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.	0.703
AGE25602.1	AGE25603.1	H045_07660	H045_07665	Putative two-component system response regulator; COG0784 FOG: CheY-like receiver.	Putative aerobic respiration sensor-response protein; COG0642 Signal transduction histidine kinase.	0.902
AGE25602.1	AGE25604.1	H045_07660	H045_07670	Putative two-component system response regulator; COG0784 FOG: CheY-like receiver.	Putative two-component system response regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.	0.847
AGE25602.1	AGE25605.1	H045_07660	H045_07675	Putative two-component system response regulator; COG0784 FOG: CheY-like receiver.	Putative two-component system sensor kinase; COG4585 Signal transduction histidine kinase.	0.798