AGE25838.1 protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGE25838.1

Cat operon regulatory protein; COG0583 Transcriptional regulator. (291 aa)

Predicted Functional Partners:

AGE25836.1

0.852

AGE25837.1

0.813

AGE25835.1

0.768

AGE26401.1

0.743

AGE27880.1

0.731

AGE25408.1

0.711

AGE25866.1

0.686

AGE28206.1

0.681

AGE28775.1

0.677

AGE24503.1

0.655

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE24503.1	AGE25838.1	H045_02135	H045_08840	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	Cat operon regulatory protein; COG0583 Transcriptional regulator.	0.655
AGE24503.1	AGE25866.1	H045_02135	H045_08980	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	COG0583 Transcriptional regulator.	0.567
AGE24503.1	AGE27880.1	H045_02135	H045_19090	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.695
AGE24503.1	AGE28206.1	H045_02135	H045_20720	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.663
AGE25408.1	AGE25838.1	H045_06680	H045_08840	COG0583 Transcriptional regulator.	Cat operon regulatory protein; COG0583 Transcriptional regulator.	0.711
AGE25408.1	AGE25866.1	H045_06680	H045_08980	COG0583 Transcriptional regulator.	COG0583 Transcriptional regulator.	0.666
AGE25408.1	AGE27880.1	H045_06680	H045_19090	COG0583 Transcriptional regulator.	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.741
AGE25835.1	AGE25836.1	H045_08825	H045_08830	Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	COG4829 Muconolactone delta-isomerase.	0.981
AGE25835.1	AGE25837.1	H045_08825	H045_08835	Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Muconate cycloisomerase 1; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	0.997
AGE25835.1	AGE25838.1	H045_08825	H045_08840	Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	Cat operon regulatory protein; COG0583 Transcriptional regulator.	0.768
AGE25836.1	AGE25835.1	H045_08830	H045_08825	COG4829 Muconolactone delta-isomerase.	Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.981
AGE25836.1	AGE25837.1	H045_08830	H045_08835	COG4829 Muconolactone delta-isomerase.	Muconate cycloisomerase 1; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	0.998
AGE25836.1	AGE25838.1	H045_08830	H045_08840	COG4829 Muconolactone delta-isomerase.	Cat operon regulatory protein; COG0583 Transcriptional regulator.	0.852
AGE25837.1	AGE25835.1	H045_08835	H045_08825	Muconate cycloisomerase 1; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.997
AGE25837.1	AGE25836.1	H045_08835	H045_08830	Muconate cycloisomerase 1; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	COG4829 Muconolactone delta-isomerase.	0.998
AGE25837.1	AGE25838.1	H045_08835	H045_08840	Muconate cycloisomerase 1; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	Cat operon regulatory protein; COG0583 Transcriptional regulator.	0.813
AGE25838.1	AGE24503.1	H045_08840	H045_02135	Cat operon regulatory protein; COG0583 Transcriptional regulator.	COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.	0.655
AGE25838.1	AGE25408.1	H045_08840	H045_06680	Cat operon regulatory protein; COG0583 Transcriptional regulator.	COG0583 Transcriptional regulator.	0.711
AGE25838.1	AGE25835.1	H045_08840	H045_08825	Cat operon regulatory protein; COG0583 Transcriptional regulator.	Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.	0.768
AGE25838.1	AGE25836.1	H045_08840	H045_08830	Cat operon regulatory protein; COG0583 Transcriptional regulator.	COG4829 Muconolactone delta-isomerase.	0.852