Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGE26290.1 | sprT | H045_11125 | H045_11135 | COG2818 3-methyladenine DNA glycosylase. | COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family. | 0.458 |
| AGE26290.1 | ttcA | H045_11125 | H045_11130 | COG2818 3-methyladenine DNA glycosylase. | tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.704 |
| AGE26296.1 | sprT | H045_11155 | H045_11135 | Hypothetical protein; Part of a sulfur-relay system. | COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family. | 0.530 |
| AGE26296.1 | ttcA | H045_11155 | H045_11130 | Hypothetical protein; Part of a sulfur-relay system. | tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.504 |
| AGE26868.1 | AGE27921.1 | H045_14015 | H045_19295 | Putative sulfurylase; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | 0.871 |
| AGE26868.1 | metG | H045_14015 | H045_02695 | Putative sulfurylase; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.529 |
| AGE26868.1 | pheT | H045_14015 | H045_11980 | Putative sulfurylase; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | phenylalanyl-tRNA ligase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.563 |
| AGE26868.1 | ttcA | H045_14015 | H045_11130 | Putative sulfurylase; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.593 |
| AGE27921.1 | AGE26868.1 | H045_19295 | H045_14015 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | Putative sulfurylase; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | 0.871 |
| AGE27921.1 | trmB | H045_19295 | H045_19285 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.667 |
| AGE27921.1 | ttcA | H045_19295 | H045_11130 | COG2104 Sulfur transfer protein involved in thiamine biosynthesis. | tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.625 |
| metG | AGE26868.1 | H045_02695 | H045_14015 | methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Putative sulfurylase; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | 0.529 |
| metG | pheT | H045_02695 | H045_11980 | methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | phenylalanyl-tRNA ligase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.874 |
| metG | pth | H045_02695 | H045_00480 | methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.513 |
| metG | trmB | H045_02695 | H045_19285 | methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.404 |
| metG | ttcA | H045_02695 | H045_11130 | methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.588 |
| mfd | pth | H045_04340 | H045_00480 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.624 |
| mfd | ttcA | H045_04340 | H045_11130 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.494 |
| pheT | AGE26868.1 | H045_11980 | H045_14015 | phenylalanyl-tRNA ligase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Putative sulfurylase; COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily. | 0.563 |
| pheT | metG | H045_11980 | H045_02695 | phenylalanyl-tRNA ligase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | methionyl-tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.874 |
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