sprT protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sprT

COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family. (164 aa)

Predicted Functional Partners:

dsrH

0.594

yccS

0.586

AGE26294.1

0.585

AGE26293.1

0.576

AGE27179.1

0.574

AGE27175.1

0.569

ttcA

0.566

AGE27774.1

0.548

AGE26296.1

0.530

AGE24514.1

0.528

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE24514.1	AGE27175.1	H045_02190	H045_15550	COG3081 Nucleoid-associated protein.	Hypothetical protein.	0.631
AGE24514.1	AGE27179.1	H045_02190	H045_15570	COG3081 Nucleoid-associated protein.	Putative transcriptional regulator.	0.591
AGE24514.1	sprT	H045_02190	H045_11135	COG3081 Nucleoid-associated protein.	COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family.	0.528
AGE24514.1	yccS	H045_02190	H045_18780	COG3081 Nucleoid-associated protein.	COG1289 Predicted membrane protein.	0.550
AGE26293.1	AGE26294.1	H045_11140	H045_11145	Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.	Sulfur relay protein TusC; COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.	0.999
AGE26293.1	AGE26296.1	H045_11140	H045_11155	Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.	Hypothetical protein; Part of a sulfur-relay system.	0.996
AGE26293.1	dsrH	H045_11140	H045_11150	Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.	Sulfur relay protein TusB; COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur.	0.999
AGE26293.1	sprT	H045_11140	H045_11135	Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.	COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family.	0.576
AGE26293.1	ttcA	H045_11140	H045_11130	Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.	tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.	0.457
AGE26294.1	AGE26293.1	H045_11145	H045_11140	Sulfur relay protein TusC; COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.	Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.	0.999
AGE26294.1	AGE26296.1	H045_11145	H045_11155	Sulfur relay protein TusC; COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.	Hypothetical protein; Part of a sulfur-relay system.	0.979
AGE26294.1	dsrH	H045_11145	H045_11150	Sulfur relay protein TusC; COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.	Sulfur relay protein TusB; COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur.	0.999
AGE26294.1	sprT	H045_11145	H045_11135	Sulfur relay protein TusC; COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.	COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family.	0.585
AGE26294.1	ttcA	H045_11145	H045_11130	Sulfur relay protein TusC; COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.	tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.	0.442
AGE26296.1	AGE26293.1	H045_11155	H045_11140	Hypothetical protein; Part of a sulfur-relay system.	Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.	0.996
AGE26296.1	AGE26294.1	H045_11155	H045_11145	Hypothetical protein; Part of a sulfur-relay system.	Sulfur relay protein TusC; COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.	0.979
AGE26296.1	dsrH	H045_11155	H045_11150	Hypothetical protein; Part of a sulfur-relay system.	Sulfur relay protein TusB; COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur.	0.980
AGE26296.1	sprT	H045_11155	H045_11135	Hypothetical protein; Part of a sulfur-relay system.	COG3091 Uncharacterized protein conserved in bacteria; Belongs to the SprT family.	0.530
AGE26296.1	ttcA	H045_11155	H045_11130	Hypothetical protein; Part of a sulfur-relay system.	tRNA 2-thiocytidine biosynthesis protein TtcA; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.	0.504
AGE27175.1	AGE24514.1	H045_15550	H045_02190	Hypothetical protein.	COG3081 Nucleoid-associated protein.	0.631