AGE27622.1 protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGE27622.1

OmpW family protein; COG3047 Outer membrane protein W. (232 aa)

Predicted Functional Partners:

hemN

0.787

ccoO

0.742

ccoN

0.695

AGE27621.1

0.648

ccoG

0.615

AGE25975.1

0.588

AGE27619.1

0.565

ppk2

0.529

pap

0.529

AGE27618.1

0.492

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE25975.1	AGE27622.1	H045_09540	H045_17800	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	OmpW family protein; COG3047 Outer membrane protein W.	0.588
AGE25975.1	hemN	H045_09540	H045_13680	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.485
AGE27618.1	AGE27619.1	H045_17780	H045_17785	Hypothetical protein.	Putative ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.	0.982
AGE27618.1	AGE27621.1	H045_17780	H045_17795	Hypothetical protein.	Lipoprotein; COG3495 Uncharacterized protein conserved in bacteria.	0.954
AGE27618.1	AGE27622.1	H045_17780	H045_17800	Hypothetical protein.	OmpW family protein; COG3047 Outer membrane protein W.	0.492
AGE27619.1	AGE27618.1	H045_17785	H045_17780	Putative ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.	Hypothetical protein.	0.982
AGE27619.1	AGE27621.1	H045_17785	H045_17795	Putative ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.	Lipoprotein; COG3495 Uncharacterized protein conserved in bacteria.	0.963
AGE27619.1	AGE27622.1	H045_17785	H045_17800	Putative ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.	OmpW family protein; COG3047 Outer membrane protein W.	0.565
AGE27621.1	AGE27618.1	H045_17795	H045_17780	Lipoprotein; COG3495 Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.954
AGE27621.1	AGE27619.1	H045_17795	H045_17785	Lipoprotein; COG3495 Uncharacterized protein conserved in bacteria.	Putative ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.	0.963
AGE27621.1	AGE27622.1	H045_17795	H045_17800	Lipoprotein; COG3495 Uncharacterized protein conserved in bacteria.	OmpW family protein; COG3047 Outer membrane protein W.	0.648
AGE27622.1	AGE25975.1	H045_17800	H045_09540	OmpW family protein; COG3047 Outer membrane protein W.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.588
AGE27622.1	AGE27618.1	H045_17800	H045_17780	OmpW family protein; COG3047 Outer membrane protein W.	Hypothetical protein.	0.492
AGE27622.1	AGE27619.1	H045_17800	H045_17785	OmpW family protein; COG3047 Outer membrane protein W.	Putative ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.	0.565
AGE27622.1	AGE27621.1	H045_17800	H045_17795	OmpW family protein; COG3047 Outer membrane protein W.	Lipoprotein; COG3495 Uncharacterized protein conserved in bacteria.	0.648
AGE27622.1	ccoG	H045_17800	H045_13655	OmpW family protein; COG3047 Outer membrane protein W.	Cytochrome c oxidase accessory protein CcoG; COG0348 Polyferredoxin.	0.615
AGE27622.1	ccoN	H045_17800	H045_13625	OmpW family protein; COG3047 Outer membrane protein W.	COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.	0.695
AGE27622.1	ccoO	H045_17800	H045_13630	OmpW family protein; COG3047 Outer membrane protein W.	COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit.	0.742
AGE27622.1	hemN	H045_17800	H045_13680	OmpW family protein; COG3047 Outer membrane protein W.	COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.787
AGE27622.1	pap	H045_17800	H045_12585	OmpW family protein; COG3047 Outer membrane protein W.	Hypothetical protein.	0.529