STRINGSTRING
AGE27765.1 AGE27765.1 AGE27764.1 AGE27764.1 AGE27766.1 AGE27766.1 AGE25901.1 AGE25901.1 AGE27763.1 AGE27763.1 AGE26179.1 AGE26179.1 AGE27205.1 AGE27205.1 AGE24512.1 AGE24512.1 AGE24828.1 AGE24828.1 AGE24506.1 AGE24506.1 AGE25564.1 AGE25564.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGE27765.1TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (812 aa)    
Predicted Functional Partners:
AGE27764.1
Sigma factor regulatory protein, FecR/PupR family; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.843
AGE27766.1
Hypothetical protein; COG3182 Uncharacterized iron-regulated membrane protein.
 
  
 0.818
AGE25901.1
Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
  
 0.797
AGE27763.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.746
AGE26179.1
Putative regulator of iron dicitrate transport; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.702
AGE27205.1
Putative regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.702
AGE24512.1
Putative transmembrane sensor protein; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.684
AGE24828.1
Sigma factor regulatory protein, FecR/PupR family; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.677
AGE24506.1
Putative iron transporter-like regulatory protein; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.671
AGE25564.1
Heme uptake transmembrane sensor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.667
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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