Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGE26317.1 | AGE27973.1 | H045_11260 | H045_19555 | Hypothetical protein. | Hypothetical protein; COG3751 Predicted proline hydroxylase. | 0.446 |
AGE27973.1 | AGE26317.1 | H045_19555 | H045_11260 | Hypothetical protein; COG3751 Predicted proline hydroxylase. | Hypothetical protein. | 0.446 |
AGE27973.1 | AGE27974.1 | H045_19555 | H045_19560 | Hypothetical protein; COG3751 Predicted proline hydroxylase. | Hypothetical protein. | 0.587 |
AGE27973.1 | hemF | H045_19555 | H045_21230 | Hypothetical protein; COG3751 Predicted proline hydroxylase. | Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.549 |
AGE27973.1 | tuf | H045_19555 | H045_18025 | Hypothetical protein; COG3751 Predicted proline hydroxylase. | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.703 |
AGE27974.1 | AGE27973.1 | H045_19560 | H045_19555 | Hypothetical protein. | Hypothetical protein; COG3751 Predicted proline hydroxylase. | 0.587 |
hemF | AGE27973.1 | H045_21230 | H045_19555 | Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | Hypothetical protein; COG3751 Predicted proline hydroxylase. | 0.549 |
tuf | AGE27973.1 | H045_18025 | H045_19555 | Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | Hypothetical protein; COG3751 Predicted proline hydroxylase. | 0.703 |