STRINGSTRING
AGE28127.1 AGE28127.1 AGE28024.1 AGE28024.1 ccmD ccmD AGE28830.1 AGE28830.1 AGE27710.1 AGE27710.1 AGE26681.1 AGE26681.1 AGE26690.1 AGE26690.1 recG recG AGE28175.1 AGE28175.1 AGE27901.1 AGE27901.1 AGE26658.1 AGE26658.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Experiments
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[Homology]
Score
AGE28127.1Hypothetical protein. (466 aa)    
Predicted Functional Partners:
AGE28024.1
Flagellar basal body-associated protein FliL-like protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.719
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.716
AGE28830.1
MJ0042 family finger-like domain-containing protein.
  
     0.707
AGE27710.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.704
AGE26681.1
Response regulator; COG0784 FOG: CheY-like receiver.
 
     0.669
AGE26690.1
Putative two-component system sensor kinase; COG5002 Signal transduction histidine kinase.
 
 
   0.668
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
 0.661
AGE28175.1
Response regulator; COG0784 FOG: CheY-like receiver.
  
    0.646
AGE27901.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
    0.630
AGE26658.1
Putative chemotaxis-like protein.
 
     0.621
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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