STRINGSTRING
AGE28135.1 AGE28135.1 AGE28137.1 AGE28137.1 AGE28134.1 AGE28134.1 icmF icmF AGE25441.1 AGE25441.1 AGE28138.1 AGE28138.1 AGE28139.1 AGE28139.1 AGE28130.1 AGE28130.1 AGE28147.1 AGE28147.1 AGE28140.1 AGE28140.1 AGE25439.1 AGE25439.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28135.1Type VI secretion-associated protein TagF; COG3913 Uncharacterized protein conserved in bacteria. (217 aa)    
Predicted Functional Partners:
AGE28137.1
COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.990
AGE28134.1
Putative phosphatase; COG0631 Serine/threonine protein phosphatase.
  
 0.983
icmF
COG3523 Uncharacterized protein conserved in bacteria.
 
  
 0.965
AGE25441.1
COG0631 Serine/threonine protein phosphatase.
  
 0.963
AGE28138.1
COG3522 Uncharacterized protein conserved in bacteria.
 
  
 0.963
AGE28139.1
Type VI secretion lipoprotein TssJ1; COG3521 Uncharacterized protein conserved in bacteria.
 
  
 0.953
AGE28130.1
Type VI secretion posttranslational regulatory protein TagR.
 
    0.928
AGE28147.1
COG3518 Uncharacterized protein conserved in bacteria.
 
  
 0.927
AGE28140.1
Type VI secretion protein Fha1; COG3456 Uncharacterized conserved protein, contains FHA domain.
 
  
 0.926
AGE25439.1
Putative outer membrane protein; COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.907
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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