STRINGSTRING
AGE28149.1 AGE28149.1 AGE28147.1 AGE28147.1 vasA vasA clpV clpV AGE28141.1 AGE28141.1 AGE28144.1 AGE28144.1 AGE28137.1 AGE28137.1 AGE28151.1 AGE28151.1 AGE28142.1 AGE28142.1 AGE28143.1 AGE28143.1 AGE28138.1 AGE28138.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28149.1Type VI secretion protein TssG1; COG3520 Uncharacterized protein conserved in bacteria. (336 aa)    
Predicted Functional Partners:
AGE28147.1
COG3518 Uncharacterized protein conserved in bacteria.
 
  
 0.979
vasA
Type VI secretion protein TssF; COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.975
clpV
Type VI secretion ATPase ClpV1; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
 
  
 0.962
AGE28141.1
Type VI secretion protein TssA1; COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.958
AGE28144.1
Type VI secretion system effector Hcp1; COG3157 Hemolysin-coregulated protein (uncharacterized).
 
  
 0.956
AGE28137.1
COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.935
AGE28151.1
COG3501 Uncharacterized protein conserved in bacteria.
 
  
 0.934
AGE28142.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.928
AGE28143.1
Type VI secretion protein TssC1; COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.909
AGE28138.1
COG3522 Uncharacterized protein conserved in bacteria.
 
  
 0.886
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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