STRINGSTRING
clpV clpV AGE28147.1 AGE28147.1 AGE28149.1 AGE28149.1 vasA vasA AGE28144.1 AGE28144.1 AGE28143.1 AGE28143.1 AGE28151.1 AGE28151.1 AGE25433.1 AGE25433.1 AGE28142.1 AGE28142.1 AGE28137.1 AGE28137.1 AGE28141.1 AGE28141.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpVType VI secretion ATPase ClpV1; COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family. (884 aa)    
Predicted Functional Partners:
AGE28147.1
COG3518 Uncharacterized protein conserved in bacteria.
 
  
 0.962
AGE28149.1
Type VI secretion protein TssG1; COG3520 Uncharacterized protein conserved in bacteria.
 
  
 0.962
vasA
Type VI secretion protein TssF; COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.956
AGE28144.1
Type VI secretion system effector Hcp1; COG3157 Hemolysin-coregulated protein (uncharacterized).
 
  
 0.933
AGE28143.1
Type VI secretion protein TssC1; COG3517 Uncharacterized protein conserved in bacteria.
 
 
 0.922
AGE28151.1
COG3501 Uncharacterized protein conserved in bacteria.
 
  
 0.911
AGE25433.1
ClpA/B-type protease; COG0542 ATPases with chaperone activity, ATP-binding subunit.
  
  
 
0.908
AGE28142.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.906
AGE28137.1
COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.903
AGE28141.1
Type VI secretion protein TssA1; COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.877
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
Server load: low (24%) [HD]