STRINGSTRING
AGE28155.1 AGE28155.1 AGE28152.1 AGE28152.1 AGE28156.1 AGE28156.1 AGE28157.1 AGE28157.1 AGE28151.1 AGE28151.1 vasA vasA AGE28153.1 AGE28153.1 AGE28137.1 AGE28137.1 AGE28154.1 AGE28154.1 AGE28142.1 AGE28142.1 AGE25720.1 AGE25720.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28155.1COG3209 Rhs family protein. (1457 aa)    
Predicted Functional Partners:
AGE28152.1
Hypothetical protein.
  
 
 0.973
AGE28156.1
Hypothetical protein.
       0.754
AGE28157.1
Hypothetical protein.
       0.685
AGE28151.1
COG3501 Uncharacterized protein conserved in bacteria.
 
  
 0.641
vasA
Type VI secretion protein TssF; COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.607
AGE28153.1
COG3209 Rhs family protein.
 
   
0.594
AGE28137.1
COG3455 Uncharacterized protein conserved in bacteria.
  
  
 0.587
AGE28154.1
Hypothetical protein.
       0.565
AGE28142.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.534
AGE25720.1
Hypothetical protein.
  
     0.532
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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