AGE28198.1 protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGE28198.1

COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (223 aa)

Predicted Functional Partners:

AGE28197.1

0.852

AGE28196.1

0.838

AGE28195.1

0.658

AGE27587.1

0.622

AGE25901.1

0.556

AGE25904.1

0.555

AGE26048.1

0.555

AGE24204.1

0.507

AGE26448.1

0.486

rnc

0.433

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE24204.1	AGE25901.1	H045_00640	H045_09155	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.491
AGE24204.1	AGE25904.1	H045_00640	H045_09170	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.529
AGE24204.1	AGE26048.1	H045_00640	H045_09905	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.529
AGE24204.1	AGE28198.1	H045_00640	H045_20680	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.507
AGE25901.1	AGE24204.1	H045_09155	H045_00640	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.491
AGE25901.1	AGE25904.1	H045_09155	H045_09170	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25901.1	AGE26048.1	H045_09155	H045_09905	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25901.1	AGE26448.1	H045_09155	H045_11915	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	L-ornithine N5-oxygenase; COG3486 Lysine/ornithine N-monooxygenase.	0.948
AGE25901.1	AGE27587.1	H045_09155	H045_17625	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	GNAT family acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.	0.415
AGE25901.1	AGE28198.1	H045_09155	H045_20680	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.556
AGE25901.1	rnc	H045_09155	H045_02245	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.443
AGE25904.1	AGE24204.1	H045_09170	H045_00640	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.529
AGE25904.1	AGE25901.1	H045_09170	H045_09155	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.999
AGE25904.1	AGE26048.1	H045_09170	H045_09905	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25904.1	AGE26448.1	H045_09170	H045_11915	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	L-ornithine N5-oxygenase; COG3486 Lysine/ornithine N-monooxygenase.	0.954
AGE25904.1	AGE28198.1	H045_09170	H045_20680	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.555
AGE25904.1	rnc	H045_09170	H045_02245	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.517
AGE26048.1	AGE24204.1	H045_09905	H045_00640	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.529
AGE26048.1	AGE25901.1	H045_09905	H045_09155	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.999
AGE26048.1	AGE25904.1	H045_09905	H045_09170	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999