STRINGSTRING
AGE28208.1 AGE28208.1 AGE27258.1 AGE27258.1 AGE28209.1 AGE28209.1 AGE27090.1 AGE27090.1 AGE27266.1 AGE27266.1 nagA nagA AGE27262.1 AGE27262.1 edd edd
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGE28208.1Transcriptional regulator, RpiR family/SIS domain protein; COG1737 Transcriptional regulators. (288 aa)    
Predicted Functional Partners:
AGE27258.1
PTS system transporter subunit IIBC; COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
  
 0.615
AGE28209.1
Putative sensory box/GGDEF family protein; COG2202 FOG: PAS/PAC domain.
  
  
 0.577
AGE27090.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
   
 0.562
AGE27266.1
PTS system trehalose-specific transporter subunits IIBC; COG1264 Phosphotransferase system IIB components.
 
  
 0.507
nagA
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
 
   
 0.434
AGE27262.1
Phosphotransferase system, EIIB; COG1264 Phosphotransferase system IIB components.
  
  
 0.431
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
   
 0.418
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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