STRINGSTRING
AGE28217.1 AGE28217.1 lptC lptC AGE26749.1 AGE26749.1 AGE25161.1 AGE25161.1 AGE28830.1 AGE28830.1 pdxY pdxY AGE28716.1 AGE28716.1 AGE24298.1 AGE24298.1 AGE25181.1 AGE25181.1 AGE26502.1 AGE26502.1 AGE24268.1 AGE24268.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28217.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
lptC
Lipopolysaccharide ABC transporter, permease protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.
  
     0.638
AGE26749.1
Hypothetical protein.
  
     0.629
AGE25161.1
Putative lipoprotein.
  
     0.627
AGE28830.1
MJ0042 family finger-like domain-containing protein.
  
     0.610
pdxY
Pyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.
       0.592
AGE28716.1
Hypothetical protein; COG0578 Glycerol-3-phosphate dehydrogenase.
  
     0.557
AGE24298.1
COG3164 Predicted membrane protein.
  
     0.551
AGE25181.1
Hypothetical protein.
  
     0.551
AGE26502.1
COG3170 Tfp pilus assembly protein FimV.
  
     0.544
AGE24268.1
COG3105 Uncharacterized protein conserved in bacteria.
  
     0.530
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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