STRINGSTRING
AGE28220.1 AGE28220.1 AGE28219.1 AGE28219.1 AGE28218.1 AGE28218.1 dksA-2 dksA-2 folE2 folE2 AGE28228.1 AGE28228.1 AGE28222.1 AGE28222.1 AGE26215.1 AGE26215.1 rpsN rpsN AGE28819.1 AGE28819.1 AGE27514.1 AGE27514.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGE28220.1CobW/P47K family protein; COG0523 Putative GTPases (G3E family). (401 aa)    
Predicted Functional Partners:
AGE28219.1
Hypothetical protein.
 
  
 0.974
AGE28218.1
Putative cibalamin biosynthesis-like protein; COG0523 Putative GTPases (G3E family).
 
  
0.866
dksA-2
Putative RNA polymerase-binding protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.845
folE2
GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.699
AGE28228.1
COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.
  
  
 0.679
AGE28222.1
Hypothetical protein; COG1391 Glutamine synthetase adenylyltransferase.
  
  
 0.677
AGE26215.1
C4-type zinc finger protein, DksA/TraR family; COG1734 DnaK suppressor protein.
  
  
 0.523
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.518
AGE28819.1
precorrin-6Y C(5,15)-methyltransferase; COG2241 Precorrin-6B methylase 1.
     
 0.509
AGE27514.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
   
 
 0.465
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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