AGE28233.1 protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGE28233.1

COG2230 Cyclopropane fatty acid synthase and related methyltransferases. (395 aa)

Predicted Functional Partners:

AGE24188.1

0.964

AGE24187.1

0.740

AGE28234.1

0.573

AGE25904.1

0.570

AGE26048.1

0.570

AGE25903.1

0.559

AGE25901.1

0.558

AGE28235.1

0.557

AGE26047.1

0.534

AGE24193.1

0.524

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE24187.1	AGE24188.1	H045_00555	H045_00560	Hypothetical protein.	Amine oxidase, flavin-containing; COG2907 Predicted NAD/FAD-binding protein.	0.964
AGE24187.1	AGE24193.1	H045_00555	H045_00585	Hypothetical protein.	Hypothetical protein.	0.829
AGE24187.1	AGE28233.1	H045_00555	H045_20855	Hypothetical protein.	COG2230 Cyclopropane fatty acid synthase and related methyltransferases.	0.740
AGE24188.1	AGE24187.1	H045_00560	H045_00555	Amine oxidase, flavin-containing; COG2907 Predicted NAD/FAD-binding protein.	Hypothetical protein.	0.964
AGE24188.1	AGE24193.1	H045_00560	H045_00585	Amine oxidase, flavin-containing; COG2907 Predicted NAD/FAD-binding protein.	Hypothetical protein.	0.829
AGE24188.1	AGE28233.1	H045_00560	H045_20855	Amine oxidase, flavin-containing; COG2907 Predicted NAD/FAD-binding protein.	COG2230 Cyclopropane fatty acid synthase and related methyltransferases.	0.964
AGE24193.1	AGE24187.1	H045_00585	H045_00555	Hypothetical protein.	Hypothetical protein.	0.829
AGE24193.1	AGE24188.1	H045_00585	H045_00560	Hypothetical protein.	Amine oxidase, flavin-containing; COG2907 Predicted NAD/FAD-binding protein.	0.829
AGE24193.1	AGE28233.1	H045_00585	H045_20855	Hypothetical protein.	COG2230 Cyclopropane fatty acid synthase and related methyltransferases.	0.524
AGE25901.1	AGE25903.1	H045_09155	H045_09165	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25901.1	AGE25904.1	H045_09155	H045_09170	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25901.1	AGE26047.1	H045_09155	H045_09900	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25901.1	AGE26048.1	H045_09155	H045_09905	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25901.1	AGE28233.1	H045_09155	H045_20855	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG2230 Cyclopropane fatty acid synthase and related methyltransferases.	0.558
AGE25903.1	AGE25901.1	H045_09165	H045_09155	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.999
AGE25903.1	AGE25904.1	H045_09165	H045_09170	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25903.1	AGE26047.1	H045_09165	H045_09900	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25903.1	AGE26048.1	H045_09165	H045_09905	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
AGE25903.1	AGE28233.1	H045_09165	H045_20855	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG2230 Cyclopropane fatty acid synthase and related methyltransferases.	0.559
AGE25904.1	AGE25901.1	H045_09170	H045_09155	COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Putative non-ribosomal antibiotic-related peptide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.999