STRINGSTRING
AGE28299.1 AGE28299.1 trkA trkA AGE28301.1 AGE28301.1 fmt fmt def def AGE25062.1 AGE25062.1 AGE26420.1 AGE26420.1 AGE28304.1 AGE28304.1 AGE26609.1 AGE26609.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGE28299.1Hypothetical protein; COG0457 FOG: TPR repeat. (103 aa)    
Predicted Functional Partners:
trkA
Potassium transporter peripheral membrane component; COG0569 K+ transport systems, NAD-binding component.
       0.759
AGE28301.1
16S rRNA methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.707
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.707
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
   0.640
AGE25062.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.608
AGE26420.1
Putative lipoprotein.
 
   
 0.456
AGE28304.1
COG1652 Uncharacterized protein containing LysM domain.
       0.438
AGE26609.1
COG0695 Glutaredoxin and related proteins.
  
     0.418
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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