STRINGSTRING
AGE28304.1 AGE28304.1 AGE28644.1 AGE28644.1 AGE28642.1 AGE28642.1 trpS trpS AGE28643.1 AGE28643.1 AGE28641.1 AGE28641.1 AGE24213.1 AGE24213.1 AGE26502.1 AGE26502.1 AGE24631.1 AGE24631.1 AGE26918.1 AGE26918.1 AGE24217.1 AGE24217.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28304.1COG1652 Uncharacterized protein containing LysM domain. (259 aa)    
Predicted Functional Partners:
AGE28644.1
Type IV pilus biogenesis protein PilQ; COG4796 Type II secretory pathway, component HofQ.
 
 
 
 0.915
AGE28642.1
COG3166 Tfp pilus assembly protein PilN.
  
 
   0.856
trpS
tryptophanyl-tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.854
AGE28643.1
Type IV pilus biogenesis protein PilOP; COG3167 Tfp pilus assembly protein PilO.
 
 
   0.845
AGE28641.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
  
 
   0.807
AGE24213.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; COG4970 Tfp pilus assembly protein FimT.
  
   
 0.745
AGE26502.1
COG3170 Tfp pilus assembly protein FimV.
 
   
 0.735
AGE24631.1
COG3497 Phage tail sheath protein FI.
  
 
 0.714
AGE26918.1
COG3497 Phage tail sheath protein FI.
  
 
 0.714
AGE24217.1
Type IV pilus biogenesis protein; COG4968 Tfp pilus assembly protein PilE.
  
     0.695
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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