STRINGSTRING
betC betC AGE28311.1 AGE28311.1 AGE27943.1 AGE27943.1 betA betA AGE28313.1 AGE28313.1 AGE26824.1 AGE26824.1 AGE28314.1 AGE28314.1 AGE26043.1 AGE26043.1 AGE28130.1 AGE28130.1 AGE25375.1 AGE25375.1 AGE28310.1 AGE28310.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betCCholine-sulfatase; COG3119 Arylsulfatase A and related enzymes. (504 aa)    
Predicted Functional Partners:
AGE28311.1
Putative ABC transporter substrate-binding protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
 
     0.781
AGE27943.1
Hypothetical protein.
 
     0.709
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
    
 0.697
AGE28313.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.645
AGE26824.1
Hypothetical protein; COG0546 Predicted phosphatases.
  
    0.638
AGE28314.1
Hypothetical protein; COG3805 Aromatic ring-cleaving dioxygenase.
 
     0.632
AGE26043.1
Chromophore maturation protein PvdO.
  
   0.606
AGE28130.1
Type VI secretion posttranslational regulatory protein TagR.
  
   0.606
AGE25375.1
Putative exported pectin lyase.
  
     0.598
AGE28310.1
COG0659 Sulfate permease and related transporters (MFS superfamily).
     
 0.542
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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