STRINGSTRING
AGE28314.1 AGE28314.1 AGE28313.1 AGE28313.1 betC betC AGE28315.1 AGE28315.1 AGE28316.1 AGE28316.1 AGE28311.1 AGE28311.1 AGE28317.1 AGE28317.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28314.1Hypothetical protein; COG3805 Aromatic ring-cleaving dioxygenase. (110 aa)    
Predicted Functional Partners:
AGE28313.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.707
betC
Choline-sulfatase; COG3119 Arylsulfatase A and related enzymes.
 
     0.632
AGE28315.1
Putative 2-dehydro-3-deoxygalactonokinase; COG3734 2-keto-3-deoxy-galactonokinase.
       0.526
AGE28316.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
       0.526
AGE28311.1
Putative ABC transporter substrate-binding protein; COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components.
       0.480
AGE28317.1
Galactonate dehydratase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
       0.430
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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