STRINGSTRING
AGE28338.1 AGE28338.1 AGE28336.1 AGE28336.1 AGE28335.1 AGE28335.1 AGE28337.1 AGE28337.1 AGE28339.1 AGE28339.1 ligD ligD AGE28369.1 AGE28369.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGE28338.1Radical SAM domain-containing protein; COG1533 DNA repair photolyase. (352 aa)    
Predicted Functional Partners:
AGE28336.1
COG2303 Choline dehydrogenase and related flavoproteins.
       0.590
AGE28335.1
Gluconate 2-dehydrogenase.
       0.589
AGE28337.1
Gluconate 2-dehydrogenase cytochrome c subunit; COG2010 Cytochrome c, mono- and diheme variants.
       0.573
AGE28339.1
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.498
ligD
ATP-dependent DNA ligase; COG0708 Exonuclease III.
 
   
 0.483
AGE28369.1
COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.
     
 0.438
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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