STRINGSTRING
AGE28355.1 AGE28355.1 thrB thrB AGE25301.1 AGE25301.1 polA polA AGE25300.1 AGE25300.1 AGE26014.1 AGE26014.1 AGE27055.1 AGE27055.1 AGE27014.1 AGE27014.1 AGE26502.1 AGE26502.1 AGE24694.1 AGE24694.1 ccmD ccmD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28355.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
thrB
COG2334 Putative homoserine kinase type II (protein kinase fold); Belongs to the pseudomonas-type ThrB family.
 
    0.799
AGE25301.1
Peptidase propeptide and YPEB domain-containing protein; COG3212 Predicted membrane protein.
 
    0.693
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.663
AGE25300.1
COG3212 Predicted membrane protein.
  
    0.643
AGE26014.1
Hypothetical protein.
  
    0.643
AGE27055.1
COG3212 Predicted membrane protein.
  
    0.643
AGE27014.1
Hypothetical protein; COG5581 Predicted glycosyltransferase.
  
     0.625
AGE26502.1
COG3170 Tfp pilus assembly protein FimV.
  
    0.518
AGE24694.1
Hypothetical protein.
  
     0.515
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.513
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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