AGE28457.1 protein (Pseudomonas poae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGE28457.1

COG5583 Uncharacterized small protein. (60 aa)

Predicted Functional Partners:

cysC

0.753

AGE28458.1

0.722

cysT

0.660

cysW

0.655

cysD

0.642

AGE27998.1

0.620

cysA

0.620

AGE28456.1

0.454

AGE26194.1

0.418

Your Current Organism:

Pseudomonas poae

NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGE26194.1	AGE27998.1	H045_10645	H045_19680	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	0.462
AGE26194.1	AGE28457.1	H045_10645	H045_21985	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	COG5583 Uncharacterized small protein.	0.418
AGE26194.1	AGE28458.1	H045_10645	H045_21990	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	Sulfate ABC transporter sulfate-binding protein; COG1613 ABC-type sulfate transport system, periplasmic component.	0.756
AGE26194.1	cysA	H045_10645	H045_22005	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	Sulfate/thiosulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.870
AGE26194.1	cysC	H045_10645	H045_00630	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.961
AGE26194.1	cysD	H045_10645	H045_00625	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	Sulfate adenylyltransferase subunit 2; COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes.	0.739
AGE26194.1	cysW	H045_10645	H045_22000	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	COG4208 ABC-type sulfate transport system, permease component.	0.802
AGE27998.1	AGE26194.1	H045_19680	H045_10645	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	0.462
AGE27998.1	AGE28457.1	H045_19680	H045_21985	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	COG5583 Uncharacterized small protein.	0.620
AGE27998.1	cysA	H045_19680	H045_22005	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	Sulfate/thiosulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.475
AGE27998.1	cysC	H045_19680	H045_00630	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.486
AGE27998.1	cysD	H045_19680	H045_00625	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	Sulfate adenylyltransferase subunit 2; COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes.	0.532
AGE27998.1	cysT	H045_19680	H045_21995	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	Sulfate ABC transporter permease; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.495
AGE27998.1	cysW	H045_19680	H045_22000	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	COG4208 ABC-type sulfate transport system, permease component.	0.550
AGE28456.1	AGE28457.1	H045_21980	H045_21985	Putative sensory box GGDEF/EAL domain-containing protein; COG2199 FOG: GGDEF domain.	COG5583 Uncharacterized small protein.	0.454
AGE28457.1	AGE26194.1	H045_21985	H045_10645	COG5583 Uncharacterized small protein.	Binding-protein dependent transport system inner membrane protein; COG0555 ABC-type sulfate transport system, permease component.	0.418
AGE28457.1	AGE27998.1	H045_21985	H045_19680	COG5583 Uncharacterized small protein.	Thiol-specific antioxidant protein LsfA; COG0450 Peroxiredoxin.	0.620
AGE28457.1	AGE28456.1	H045_21985	H045_21980	COG5583 Uncharacterized small protein.	Putative sensory box GGDEF/EAL domain-containing protein; COG2199 FOG: GGDEF domain.	0.454
AGE28457.1	AGE28458.1	H045_21985	H045_21990	COG5583 Uncharacterized small protein.	Sulfate ABC transporter sulfate-binding protein; COG1613 ABC-type sulfate transport system, periplasmic component.	0.722
AGE28457.1	cysA	H045_21985	H045_22005	COG5583 Uncharacterized small protein.	Sulfate/thiosulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.620