STRINGSTRING
AGE28545.1 AGE28545.1 AGE28544.1 AGE28544.1 AGE28540.1 AGE28540.1 AGE28541.1 AGE28541.1 AGE28539.1 AGE28539.1 AGE28543.1 AGE28543.1 AGE27484.1 AGE27484.1 AGE25237.1 AGE25237.1 AGE28542.1 AGE28542.1 AGE26569.1 AGE26569.1 AGE24544.1 AGE24544.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGE28545.1COG3672 Predicted periplasmic protein. (238 aa)    
Predicted Functional Partners:
AGE28544.1
Diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain.
 
 
 0.967
AGE28540.1
Type I toxin efflux ATP-binding protein; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.834
AGE28541.1
COG1538 Outer membrane protein.
 
   
 0.821
AGE28539.1
Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein.
 
  
 0.799
AGE28543.1
Hypothetical protein.
 
     0.729
AGE27484.1
Developmental regulator MorA; COG2199 FOG: GGDEF domain.
 
 
 
 0.556
AGE25237.1
Hypothetical protein; COG2200 FOG: EAL domain.
 
 
 
 0.549
AGE28542.1
Outer membrane adhesin-like protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
   
 0.539
AGE26569.1
Sensory box/GGDEF domain/EAL domain-containing protein; COG2202 FOG: PAS/PAC domain.
   
 
 0.499
AGE24544.1
Putative signal transduction GGDEF domain-containing membrane protein; COG2199 FOG: GGDEF domain.
   
 
 0.457
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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