STRINGSTRING
AGE28744.1 AGE28744.1 AGE28223.1 AGE28223.1 miaA miaA mutL mutL AGE28743.1 AGE28743.1 nnrD nnrD rlpA-2 rlpA-2 AGE28634.1 AGE28634.1 AGE28569.1 AGE28569.1 AGE27925.1 AGE27925.1 AGE24738.1 AGE24738.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AGE28744.1COG0860 N-acetylmuramoyl-L-alanine amidase. (473 aa)    
Predicted Functional Partners:
AGE28223.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
0.943
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
   
 0.886
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
  
 0.872
AGE28743.1
Hypothetical protein; COG0802 Predicted ATPase or kinase.
  
 
 0.842
nnrD
YjeF family protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
     
 0.807
rlpA-2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 0.766
AGE28634.1
COG3087 Cell division protein.
 
 
 0.735
AGE28569.1
Putative peptidase; COG4942 Membrane-bound metallopeptidase.
 
   
 0.697
AGE27925.1
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
   
 0.695
AGE24738.1
Lipoprotein NlpD; COG0739 Membrane proteins related to metalloendopeptidases.
 
  
 0.692
Your Current Organism:
Pseudomonas poae
NCBI taxonomy Id: 1282356
Other names: P. poae RE*1-1-14, Pseudomonas poae RE*1-1-14
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