STRINGSTRING
AGI21939.1 AGI21939.1 trkA trkA AGI21941.1 AGI21941.1 fmt fmt def def AGI23975.1 AGI23975.1 AGI26455.1 AGI26455.1 AGI24436.1 AGI24436.1 AGI24437.1 AGI24437.1 dnaE2 dnaE2 AGI25549.1 AGI25549.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
AGI21939.1Hypothetical protein; COG0457 FOG: TPR repeat. (105 aa)    
Predicted Functional Partners:
trkA
Potassium transporter peripheral membrane component; COG0569 K+ transport systems, NAD-binding component.
       0.763
AGI21941.1
16S rRNA methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.646
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.646
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
   0.628
AGI23975.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.499
AGI26455.1
Esterase EstA; COG3240 Phospholipase/lecithinase/hemolysin.
 
   0.486
AGI24436.1
Hypothetical protein; COG0468 RecA/RadA recombinase.
  
     0.450
AGI24437.1
Hypothetical protein; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair.
  
     0.436
dnaE2
Error-prone DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
 
     0.433
AGI25549.1
Hypothetical protein.
  
     0.433
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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