STRINGSTRING
AGI21944.1 AGI21944.1 AGI26390.1 AGI26390.1 AGI26392.1 AGI26392.1 AGI26393.1 AGI26393.1 AGI26394.1 AGI26394.1 AGI26391.1 AGI26391.1 AGI25070.1 AGI25070.1 trpS trpS AGI22821.1 AGI22821.1 AGI25033.1 AGI25033.1 AGI25207.1 AGI25207.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI21944.1COG1652 Uncharacterized protein containing LysM domain. (341 aa)    
Predicted Functional Partners:
AGI26390.1
Type 4 fimbrial biogenesis outer membrane protein PilQ precursor; COG4796 Type II secretory pathway, component HofQ.
 
 
 
 0.962
AGI26392.1
Type 4 fimbrial biogenesis protein PilO; COG3167 Tfp pilus assembly protein PilO.
 
 
   0.881
AGI26393.1
Type 4 fimbrial biogenesis protein PilN; COG3166 Tfp pilus assembly protein PilN.
  
 
   0.881
AGI26394.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
  
 
   0.878
AGI26391.1
Type 4 fimbrial biogenesis protein PilP; COG3168 Tfp pilus assembly protein PilP.
 
 
   0.849
AGI25070.1
COG3215 Tfp pilus assembly protein PilZ.
  
    0.781
trpS
tryptophanyl-tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.746
AGI22821.1
COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
  
     0.743
AGI25033.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
     0.742
AGI25207.1
COG3170 Tfp pilus assembly protein FimV.
 
   
 0.741
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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