Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGI21945.1 | AGI22334.1 | H681_00315 | H681_02260 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | COG1040 Predicted amidophosphoribosyltransferases. | 0.922 |
| AGI21945.1 | AGI22470.1 | H681_00315 | H681_02940 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.732 |
| AGI21945.1 | AGI22865.1 | H681_00315 | H681_04925 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.785 |
| AGI21945.1 | AGI22994.1 | H681_00315 | H681_05570 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family. | 0.672 |
| AGI21945.1 | AGI25094.1 | H681_00315 | H681_16130 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein. | 0.900 |
| AGI21945.1 | AGI26672.1 | H681_00315 | H681_24025 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | Magnesium chelatase; COG0606 Predicted ATPase with chaperone activity. | 0.866 |
| AGI21945.1 | recA | H681_00315 | H681_07745 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.661 |
| AGI21945.1 | recG | H681_00315 | H681_24280 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.659 |
| AGI21945.1 | topA | H681_00315 | H681_16245 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | DNA topoisomerase I subunit omega; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus rem [...] | 0.649 |
| AGI21945.1 | tsaC | H681_00315 | H681_00320 | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | Hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate. | 0.720 |
| AGI22334.1 | AGI21945.1 | H681_02260 | H681_00315 | COG1040 Predicted amidophosphoribosyltransferases. | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | 0.922 |
| AGI22334.1 | AGI22470.1 | H681_02260 | H681_02940 | COG1040 Predicted amidophosphoribosyltransferases. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.528 |
| AGI22334.1 | AGI22994.1 | H681_02260 | H681_05570 | COG1040 Predicted amidophosphoribosyltransferases. | Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family. | 0.727 |
| AGI22334.1 | AGI25094.1 | H681_02260 | H681_16130 | COG1040 Predicted amidophosphoribosyltransferases. | DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein. | 0.880 |
| AGI22334.1 | AGI26672.1 | H681_02260 | H681_24025 | COG1040 Predicted amidophosphoribosyltransferases. | Magnesium chelatase; COG0606 Predicted ATPase with chaperone activity. | 0.850 |
| AGI22334.1 | recA | H681_02260 | H681_07745 | COG1040 Predicted amidophosphoribosyltransferases. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.549 |
| AGI22334.1 | recG | H681_02260 | H681_24280 | COG1040 Predicted amidophosphoribosyltransferases. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.442 |
| AGI22470.1 | AGI21945.1 | H681_02940 | H681_00315 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA protecting protein DprA; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake. | 0.732 |
| AGI22470.1 | AGI22334.1 | H681_02940 | H681_02260 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | COG1040 Predicted amidophosphoribosyltransferases. | 0.528 |
| AGI22470.1 | AGI25094.1 | H681_02940 | H681_16130 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein. | 0.636 |
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