STRINGSTRING
AGI21953.1 AGI21953.1 AGI21954.1 AGI21954.1 AGI24502.1 AGI24502.1 AGI23186.1 AGI23186.1 AGI23356.1 AGI23356.1 AGI24790.1 AGI24790.1 AGI22052.1 AGI22052.1 AGI24783.1 AGI24783.1 AGI22353.1 AGI22353.1 AGI23614.1 AGI23614.1 AGI24777.1 AGI24777.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI21953.1COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
AGI21954.1
Dopa 4,5-dioxygenase; COG3805 Aromatic ring-cleaving dioxygenase.
       0.788
AGI24502.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.758
AGI23186.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.757
AGI23356.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.755
AGI24790.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.752
AGI22052.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.751
AGI24783.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.743
AGI22353.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.734
AGI23614.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.732
AGI24777.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.729
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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