Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGI22012.1 | AGI22014.1 | H681_00650 | H681_00660 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | Hypothetical protein. | 0.984 |
AGI22012.1 | AGI22016.1 | H681_00650 | H681_00670 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. | 0.849 |
AGI22012.1 | AGI22017.1 | H681_00650 | H681_00675 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | COG3175 Cytochrome oxidase assembly factor. | 0.991 |
AGI22012.1 | AGI22018.1 | H681_00650 | H681_00680 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | Cytochrome-c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.843 |
AGI22012.1 | AGI22019.1 | H681_00650 | H681_00685 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.912 |
AGI22012.1 | AGI22850.1 | H681_00650 | H681_04850 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family. | 0.511 |
AGI22012.1 | AGI26820.1 | H681_00650 | H681_24765 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | Membrane protein NirO; COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. | 0.565 |
AGI22012.1 | cyoE | H681_00650 | H681_00645 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.996 |
AGI22012.1 | cyoE-2 | H681_00650 | H681_04865 | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.974 |
AGI22014.1 | AGI22012.1 | H681_00660 | H681_00650 | Hypothetical protein. | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | 0.984 |
AGI22014.1 | AGI22016.1 | H681_00660 | H681_00670 | Hypothetical protein. | COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. | 0.825 |
AGI22014.1 | AGI22017.1 | H681_00660 | H681_00675 | Hypothetical protein. | COG3175 Cytochrome oxidase assembly factor. | 0.954 |
AGI22014.1 | AGI22018.1 | H681_00660 | H681_00680 | Hypothetical protein. | Cytochrome-c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. | 0.809 |
AGI22014.1 | AGI22019.1 | H681_00660 | H681_00685 | Hypothetical protein. | Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.939 |
AGI22014.1 | AGI22850.1 | H681_00660 | H681_04850 | Hypothetical protein. | COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family. | 0.530 |
AGI22014.1 | AGI26820.1 | H681_00660 | H681_24765 | Hypothetical protein. | Membrane protein NirO; COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. | 0.401 |
AGI22014.1 | cyoE | H681_00660 | H681_00645 | Hypothetical protein. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.911 |
AGI22014.1 | cyoE-2 | H681_00660 | H681_04865 | Hypothetical protein. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.537 |
AGI22016.1 | AGI22012.1 | H681_00670 | H681_00650 | COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. | COG1612 Uncharacterized protein required for cytochrome oxidase assembly. | 0.849 |
AGI22016.1 | AGI22014.1 | H681_00670 | H681_00660 | COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3. | Hypothetical protein. | 0.825 |
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