STRINGSTRING
AGI22088.1 AGI22088.1 thrB thrB AGI24638.1 AGI24638.1 AGI24639.1 AGI24639.1 polA polA AGI23374.1 AGI23374.1 AGI25320.1 AGI25320.1 AGI23622.1 AGI23622.1 AGI23787.1 AGI23787.1 AGI25111.1 AGI25111.1 AGI25922.1 AGI25922.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22088.1Hypothetical protein. (95 aa)    
Predicted Functional Partners:
thrB
COG2334 Putative homoserine kinase type II (protein kinase fold); Belongs to the pseudomonas-type ThrB family.
 
    0.830
AGI24638.1
Peptidase propeptide and YpeB domain-containing protein; COG3212 Predicted membrane protein.
  
    0.679
AGI24639.1
COG3212 Predicted membrane protein.
  
    0.679
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.650
AGI23374.1
Hypothetical protein.
  
     0.592
AGI25320.1
COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA; Belongs to the UPF0149 family.
  
     0.586
AGI23622.1
COG5581 Predicted glycosyltransferase.
  
     0.493
AGI23787.1
Transcriptional regulator.
  
    0.483
AGI25111.1
COG1376 Uncharacterized protein conserved in bacteria.
  
     0.480
AGI25922.1
Transcriptional regulator MvaT, P16 subunit.
  
    0.475
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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