STRINGSTRING
AGI22095.1 AGI22095.1 AGI23072.1 AGI23072.1 AGI22094.1 AGI22094.1 AGI25671.1 AGI25671.1 AGI25149.1 AGI25149.1 AGI23189.1 AGI23189.1 AGI22093.1 AGI22093.1 AGI24714.1 AGI24714.1 AGI26312.1 AGI26312.1 AGI26369.1 AGI26369.1 AGI22753.1 AGI22753.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22095.1Diguanylate cyclase; COG2199 FOG: GGDEF domain. (644 aa)    
Predicted Functional Partners:
AGI23072.1
Two component response regulator; COG0784 FOG: CheY-like receiver.
 
 
 0.844
AGI22094.1
Hydrolase; COG3568 Metal-dependent hydrolase.
  
    0.840
AGI25671.1
Hypothetical protein; COG2200 FOG: EAL domain.
 
  
 0.825
AGI25149.1
Diguanylate phosphodiesterase; COG4943 Predicted signal transduction protein containing sensor and EAL domains.
  
 0.818
AGI23189.1
Protein LapD; COG2199 FOG: GGDEF domain.
 
  
 0.812
AGI22093.1
Thiol:disulfide interchange protein DsbA; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.781
AGI24714.1
Two-component response regulator; COG0784 FOG: CheY-like receiver.
  
  
 0.774
AGI26312.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; COG2202 FOG: PAS/PAC domain.
 
 
 0.699
AGI26369.1
Hypothetical protein; COG2203 FOG: GAF domain.
 
 
0.601
AGI22753.1
Motility regulator; COG2199 FOG: GGDEF domain.
 
 
0.545
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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