STRINGSTRING
AGI22110.1 AGI22110.1 dksA dksA folE2 folE2 AGI22108.1 AGI22108.1 AGI22112.1 AGI22112.1 rpsN rpsN AGI22486.1 AGI22486.1 AGI22510.1 AGI22510.1 AGI24515.1 AGI24515.1 AGI22511.1 AGI22511.1 rpmB rpmB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGI22110.1Cobalamin synthesis protein, P47K; COG0523 Putative GTPases (G3E family). (400 aa)    
Predicted Functional Partners:
dksA
RNA polymerase-binding protein DksA; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.901
folE2
GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.815
AGI22108.1
Hypothetical protein.
  
  
 0.683
AGI22112.1
COG0523 Putative GTPases (G3E family).
 
  
0.668
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.546
AGI22486.1
Precorrin-6y C5,15-methyltransferase subunit CbiE; COG2241 Precorrin-6B methylase 1.
     
 0.515
AGI22510.1
ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
  
 0.502
AGI24515.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
   
 
 0.494
AGI22511.1
Hypothetical protein.
  
  
 0.433
rpmB
COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.418
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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