STRINGSTRING
AGI22212.1 AGI22212.1 AGI22210.1 AGI22210.1 AGI22211.1 AGI22211.1 AGI22209.1 AGI22209.1 AGI22284.1 AGI22284.1 AGI22285.1 AGI22285.1 AGI23988.1 AGI23988.1 AGI23989.1 AGI23989.1 AGI25317.1 AGI25317.1 AGI23990.1 AGI23990.1 AGI23868.1 AGI23868.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22212.1COG1309 Transcriptional regulator. (217 aa)    
Predicted Functional Partners:
AGI22210.1
Hypothetical protein.
 
   
 0.758
AGI22211.1
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
  
 0.748
AGI22209.1
Putative oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
 
  
 0.690
AGI22284.1
Poly(hydroxyalcanoate) granule associated protein.
  
     0.669
AGI22285.1
Poly(hydroxyalkanoate) granule-associated protein.
  
     0.629
AGI23988.1
Hypothetical protein; COG3271 Predicted double-glycine peptidase.
  
     0.628
AGI23989.1
Hypothetical protein; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
  
     0.601
AGI25317.1
Hypothetical protein.
  
  
 0.570
AGI23990.1
Hypothetical protein; COG2067 Long-chain fatty acid transport protein.
  
     0.548
AGI23868.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.521
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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