STRINGSTRING
AGI22303.1 AGI22303.1 AGI26475.1 AGI26475.1 AGI22302.1 AGI22302.1 AGI26476.1 AGI26476.1 AGI25057.1 AGI25057.1 AGI22300.1 AGI22300.1 AGI22301.1 AGI22301.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
AGI22303.1Periplasmic transport system; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (243 aa)    
Predicted Functional Partners:
AGI26475.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.579
AGI22302.1
Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase.
       0.576
AGI26476.1
COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.552
AGI25057.1
Extracellular solute-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.532
AGI22300.1
COG1030 Membrane-bound serine protease (ClpP class).
       0.414
AGI22301.1
Putative stomatin-like protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
       0.414
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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