STRINGSTRING
AGI22307.1 AGI22307.1 AGI23993.1 AGI23993.1 AGI23992.1 AGI23992.1 AGI22306.1 AGI22306.1 rimK rimK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22307.1COG4067 Uncharacterized protein conserved in archaea. (170 aa)    
Predicted Functional Partners:
AGI23993.1
Hypothetical protein.
 
    0.789
AGI23992.1
COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes.
 
     0.782
AGI22306.1
COG1278 Cold shock proteins.
       0.533
rimK
COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.
 
     0.466
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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