STRINGSTRING
AGI22320.1 AGI22320.1 AGI26151.1 AGI26151.1 arnA arnA AGI24690.1 AGI24690.1 fmt fmt AGI22645.1 AGI22645.1 AGI24472.1 AGI24472.1 AGI22319.1 AGI22319.1 AGI21941.1 AGI21941.1 AGI22318.1 AGI22318.1 AGI23038.1 AGI23038.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Textmining
[Homology]
Score
AGI22320.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
AGI26151.1
Putative signal transduction protein with EFhand domain; COG5126 Ca2+-binding protein (EF-Hand superfamily).
    
 0.596
arnA
Bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily.
  
   0.589
AGI24690.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
 
 
 0.583
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.579
AGI22645.1
Serine-threonine kinase Stk1; COG0515 Serine/threonine protein kinase.
  
 
 0.576
AGI24472.1
2-oxoisovalerate dehydrogenase subunit beta; COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
   
 0.570
AGI22319.1
Streptogramin lyase; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid.
       0.555
AGI21941.1
16S rRNA methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.550
AGI22318.1
COG0625 Glutathione S-transferase.
    
  0.528
AGI23038.1
Lipopolysaccharide kinase InaA.
   
 0.517
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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