STRINGSTRING
AGI22321.1 AGI22321.1 AGI22322.1 AGI22322.1 AGI22113.1 AGI22113.1 AGI24397.1 AGI24397.1 AGI21956.1 AGI21956.1 AGI23528.1 AGI23528.1 AGI21955.1 AGI21955.1 AGI24122.1 AGI24122.1 AGI24482.1 AGI24482.1 AGI24443.1 AGI24443.1 AGI22323.1 AGI22323.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AGI22321.1TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (802 aa)    
Predicted Functional Partners:
AGI22322.1
COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.882
AGI22113.1
TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.831
AGI24397.1
COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.821
AGI21956.1
FecR, iron siderophore sensor protein; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.808
AGI23528.1
Putative transmembrane sensor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.807
AGI21955.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.798
AGI24122.1
Putative FecR protein; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.797
AGI24482.1
Putative transmembrane sensor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.795
AGI24443.1
PpsD; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
  
 0.786
AGI22323.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.760
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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