STRINGSTRING
AGI22374.1 AGI22374.1 AGI22375.1 AGI22375.1 AGI22376.1 AGI22376.1 AGI26584.1 AGI26584.1 AGI22373.1 AGI22373.1 trpS trpS AGI26908.1 AGI26908.1 AGI25146.1 AGI25146.1 AGI25492.1 AGI25492.1 AGI25839.1 AGI25839.1 AGI22215.1 AGI22215.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22374.1SpoVR family protein. (517 aa)    
Predicted Functional Partners:
AGI22375.1
Hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.995
AGI22376.1
PrkA family serine protein kinase; COG2766 Putative Ser protein kinase.
 
  
 0.993
AGI26584.1
Hypothetical protein.
   
  
 0.692
AGI22373.1
Hypothetical protein.
       0.644
trpS
tryptophanyl-tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.565
AGI26908.1
COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.
  
  
 0.550
AGI25146.1
Hypothetical protein.
   
    0.541
AGI25492.1
Hypothetical protein.
   
  
 0.536
AGI25839.1
COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
    0.485
AGI22215.1
Hypothetical protein.
   
  
 0.472
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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